{ "_id": "6ab37ff83d719c1f8409027c", "Package": "OxyBS", "Type": "Package", "Title": "Processing of Oxy-Bisulfite Microarray Data", "Version": "1.5", "Date": "2017-02-20", "Author": "E. Andres Houseman, Sc.D. and Kevin C. Johnson", "Maintainer": "E. Andres Houseman ", "Description": "Provides utilities for processing of Oxy-Bisulfite\nmicroarray data (e.g. via the Illumina Infinium platform,\n) with tandem arrays, one using\nconventional bisulfite conversion, the other using\noxy-bisulfite conversion.", "License": "GPL (>= 2)", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-23 07:05:11 UTC", "User": "root" }, "Repository": "https://eahouseman.r-universe.dev", "Date/Publication": "2017-02-20 22:58:16 UTC", "RemoteUrl": "https://github.com/cran/OxyBS", "RemoteRef": "HEAD", "RemoteSha": "45e8a684ce45b971510a81d97572b8703f2d04a0", "_user": "eahouseman", "_type": "src", "_file": "OxyBS_1.5.tar.gz", "_fileid": "https://r2.ropensci.org/8dca003be9ca3536d2207dd2010c70da26fba9c0db18c61361261cb8c48415e0", "_filesize": 121639, "_sha256": "8dca003be9ca3536d2207dd2010c70da26fba9c0db18c61361261cb8c48415e0", "_expires": "2027-01-01T07:29:58.000Z", "_created": "2026-09-23T07:05:11.000Z", "_published": "2026-09-23T07:30:00.817Z", "_jobs": [ { "job": 107079860756, "time": 104, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10736922530" }, { "job": 107079860607, "time": 90, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10736852748" }, { "job": 107079860704, "time": 69, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10737671353" }, { "job": 107079860672, "time": 81, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10738160398" }, { "job": 107079147518, "time": 153, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10736218339" }, { "job": 107079860657, "time": 101, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10736519604" }, { "job": 107079860659, "time": 48, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10736483539" }, { "job": 107079860684, "time": 52, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10736499419" }, { "job": 107079860802, "time": 53, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10735994509" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/eahouseman/actions/runs/35829646572", "_status": "success", "_upstream": "https://github.com/cran/OxyBS", "_commit": { "id": "45e8a684ce45b971510a81d97572b8703f2d04a0", "author": "E. Andres Houseman ", "committer": "cran-robot ", "message": "version 1.5\n", "time": 1487631496 }, "_maintainer": { "name": "E. Andres Houseman", "email": "eahouseman@gmail.com", "login": "eahouseman", "description": "I hold a doctorate in Biostatistics and have held faculty positions in Public Health. I am currently working on some community projects to learn ML/AI.", "uuid": 46732893 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.2.2", "role": "Depends" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "eahouseman", "count": 1, "uuid": 46732893 } ], "_userbio": { "uuid": 46732893, "type": "user", "name": "Eugene Andres Houseman", "followers": 4, "description": "I hold a doctorate in Biostatistics and have held faculty positions in Public Health. I am currently working on some community projects to learn ML/AI." }, "_downloads": { "count": 298, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/OxyBS" }, "_mentions": 1, "_searchresults": 12, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/OxyBS.html" ], "_realowner": "eahouseman", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2015-12-01" }, { "version": "1.5", "date": "2017-02-20" } ], "_exports": [ "diffBeta1", "diffBeta2", "fitOneOxBS", "fitOxBS", "likeOxBS", "scoreOxBS" ], "_datasets": [ { "name": "exampleMethBS", "title": "Sample Data: Methylation (red) signals from conventional bisulfite conversion.", "object": "OxyBSSampleData", "file": "OxyBSSampleData.RData", "class": [ "matrix", "array" ], "fields": [ "3999941120_R03C01", "3999941120_R03C02", "3999941120_R05C02", "3999941120_R01C01", "3999941120_R01C02", "3999941120_R06C02", "3999941129_R02C02", "3999941129_R06C01", "3999941129_R02C01", "3999941129_R05C02", "3999941129_R05C01", "3999941129_R03C02", "3999840044_R01C02", "3999840044_R04C02", "3999840044_R04C01", "3999840044_R03C01", "3999840044_R06C02", "3999840044_R05C01", "3999840069_R01C02", "3999840069_R01C01", "3999840069_R06C01", "3999840069_R05C02", "3999840069_R02C01", "3999840069_R03C01", "3999876055_R02C01", "3999876055_R03C02", "3999876055_R06C02", "3999876055_R01C01", "3999876055_R06C01", "3999876055_R05C02" ], "rows": 30, "table": true, "tojson": true }, { "name": "exampleMethOxBS", "title": "Sample Data: Methylation (red) signals from oxy-bisulfite conversion.", "object": "OxyBSSampleData", "file": "OxyBSSampleData.RData", "class": [ "matrix", "array" ], "fields": [ "3999941120_R05C01", "3999941120_R02C02", "3999941120_R04C01", "3999941120_R04C02", "3999941120_R02C01", "3999941120_R06C01", "3999941129_R04C01", "3999941129_R06C02", "3999941129_R04C02", "3999941129_R03C01", "3999941129_R01C01", "3999941129_R01C02", "3999840044_R02C02", "3999840044_R02C01", "3999840044_R03C02", "3999840044_R05C02", "3999840044_R06C01", "3999840044_R01C01", "3999840069_R05C01", "3999840069_R03C02", "3999840069_R04C02", "3999840069_R04C01", "3999840069_R06C02", "3999840069_R02C02", "3999876055_R02C02", "3999876055_R05C01", "3999876055_R01C02", "3999876055_R04C02", "3999876055_R04C01", "3999876055_R03C01" ], "rows": 30, "table": true, "tojson": true }, { "name": "exampleUnmethBS", "title": "Sample Data: Unmethylated (green) signals from conventional bisulfite conversion.", "object": "OxyBSSampleData", "file": "OxyBSSampleData.RData", "class": [ "matrix", "array" ], "fields": [ "3999941120_R03C01", "3999941120_R03C02", "3999941120_R05C02", "3999941120_R01C01", "3999941120_R01C02", "3999941120_R06C02", "3999941129_R02C02", "3999941129_R06C01", "3999941129_R02C01", "3999941129_R05C02", "3999941129_R05C01", "3999941129_R03C02", "3999840044_R01C02", "3999840044_R04C02", "3999840044_R04C01", "3999840044_R03C01", "3999840044_R06C02", "3999840044_R05C01", "3999840069_R01C02", "3999840069_R01C01", "3999840069_R06C01", "3999840069_R05C02", "3999840069_R02C01", "3999840069_R03C01", "3999876055_R02C01", "3999876055_R03C02", "3999876055_R06C02", "3999876055_R01C01", "3999876055_R06C01", "3999876055_R05C02" ], "rows": 30, "table": true, "tojson": true }, { "name": "exampleUnmethOxBS", "title": "Sample Data: Unmethylated (green) signals from oxy-bisulfite conversion.", "object": "OxyBSSampleData", "file": "OxyBSSampleData.RData", "class": [ "matrix", "array" ], "fields": [ "3999941120_R05C01", "3999941120_R02C02", "3999941120_R04C01", "3999941120_R04C02", "3999941120_R02C01", "3999941120_R06C01", "3999941129_R04C01", "3999941129_R06C02", "3999941129_R04C02", "3999941129_R03C01", "3999941129_R01C01", "3999941129_R01C02", "3999840044_R02C02", "3999840044_R02C01", "3999840044_R03C02", "3999840044_R05C02", "3999840044_R06C01", "3999840044_R01C01", "3999840069_R05C01", "3999840069_R03C02", "3999840069_R04C02", "3999840069_R04C01", "3999840069_R06C02", "3999840069_R02C02", "3999876055_R02C02", "3999876055_R05C01", "3999876055_R01C02", "3999876055_R04C02", "3999876055_R04C01", "3999876055_R03C01" ], "rows": 30, "table": true, "tojson": true } ], "_help": [ { "page": "diffBeta1", "title": "First derivative of beta minus-log-pdf with respect to first parameter", "topics": [ "diffBeta1" ] }, { "page": "diffBeta2", "title": "First derivative of beta minus-log-pdf with respect to second parameter", "topics": [ "diffBeta2" ] }, { "page": "exampleMethBS", "title": "Sample Data: Methylation (red) signals from conventional bisulfite conversion.", "topics": [ "exampleMethBS" ] }, { "page": "exampleMethOxBS", "title": "Sample Data: Methylation (red) signals from oxy-bisulfite conversion.", "topics": [ "exampleMethOxBS" ] }, { "page": "exampleUnmethBS", "title": "Sample Data: Unmethylated (green) signals from conventional bisulfite conversion.", "topics": [ "exampleUnmethBS" ] }, { "page": "exampleUnmethOxBS", "title": "Sample Data: Unmethylated (green) signals from oxy-bisulfite conversion.", "topics": [ "exampleUnmethOxBS" ] }, { "page": "fitOneOxBS", "title": "Fit one OxyBS result", "topics": [ "fitOneOxBS" ] }, { "page": "fitOxBS", "title": "Fit OxyBS for one specimen", "topics": [ "fitOxBS" ] }, { "page": "likeOxBS", "title": "Likelihood function for C/5mC/5hmC likelihood estimator", "topics": [ "likeOxBS" ] }, { "page": "scoreOxBS", "title": "Score function for C/5mC/5hmC likelihood estimator", "topics": [ "scoreOxBS" ] } ], "_rundeps": [], "_score": 1.0791812460476249, "_indexed": true, "_nocasepkg": "oxybs", "_universes": [ "eahouseman" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.5", "date": "2026-09-23T07:07:00.000Z", "distro": "resolute", "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0", "fileid": "https://r2.ropensci.org/df286158fa42dd4cbd633e607b0ad78fccb241045662c33e7535e28b48c83e45", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/35829646572" }, { "r": "4.6.1", "os": "linux", "version": "1.5", "date": "2026-09-23T07:06:48.000Z", "distro": "resolute", "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0", "fileid": "https://r2.ropensci.org/b1ab6c1bf5bf82ba31e25e9b8bd11aceaebd15cb8ac64397eb22be1fa20fccff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/35829646572" }, { "r": "4.5.3", "os": "mac", "version": "1.5", "date": "2026-09-23T07:29:30.000Z", "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0", "fileid": "https://r2.ropensci.org/6b8db9d42a0c5a121ef85cf6a43c86c713f834212f6ccb31ca5158965a393fbc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/35829646572" }, { "r": "4.6.1", "os": "mac", "version": "1.5", "date": "2026-09-23T07:28:53.000Z", "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0", "fileid": "https://r2.ropensci.org/fff3c153010809ff042442d05e2e2010c61a5f95e78e017efa43ecae952eba56", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/35829646572" }, { "r": "4.6.0", "os": "wasm", "version": "1.5", "date": "2026-09-23T07:07:06.000Z", "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0", "fileid": "https://r2.ropensci.org/d47c373a77f9cc3a5538bf903863cd126975fbd268df6cc981498116a0e38113", "status": "success", "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/35829646572" }, { "r": "4.7.0", "os": "win", "version": "1.5", "date": "2026-09-23T07:05:59.000Z", "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0", "fileid": "https://r2.ropensci.org/9c02b1e3676ae57fd54f1f2660fac0c942c5d3994c684cb1570c88bca825172b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/35829646572" }, { "r": "4.5.3", "os": "win", "version": "1.5", "date": "2026-09-23T07:06:07.000Z", "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0", "fileid": "https://r2.ropensci.org/18db01ae4c82176bbdc43f38f3eb0ad6134b486f6a77c4590d02a8c64f4ff777", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/35829646572" }, { "r": "4.6.1", "os": "win", "version": "1.5", "date": "2026-09-23T07:06:05.000Z", "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0", "fileid": "https://r2.ropensci.org/d73b6c7e927383db404a5e525bc087735db67176f949aeecc95d347338d417bf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/35829646572" } ] }