{
  "_id": "6a157205acfb0bcc41d653c2",
  "Package": "OxyBS",
  "Type": "Package",
  "Title": "Processing of Oxy-Bisulfite Microarray Data",
  "Version": "1.5",
  "Date": "2017-02-20",
  "Author": "E. Andres Houseman, Sc.D. and Kevin C. Johnson",
  "Maintainer": "E. Andres Houseman <eahouseman@gmail.com>",
  "Description": "Provides utilities for processing of Oxy-Bisulfite\nmicroarray data (e.g. via the Illumina Infinium platform,\n<http://www.illumina.com>) with tandem arrays, one using\nconventional bisulfite conversion, the other using\noxy-bisulfite conversion.",
  "License": "GPL (>= 2)",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-26 10:10:15 UTC",
    "User": "root"
  },
  "Repository": "https://eahouseman.r-universe.dev",
  "Date/Publication": "2017-02-20 22:58:16 UTC",
  "RemoteUrl": "https://github.com/cran/OxyBS",
  "RemoteRef": "HEAD",
  "RemoteSha": "45e8a684ce45b971510a81d97572b8703f2d04a0",
  "MD5sum": "e0eb83ae61bb9b7e1af80ecfda9b478e",
  "_user": "eahouseman",
  "_type": "src",
  "_file": "OxyBS_1.5.tar.gz",
  "_fileid": "5b166d7368c46ee75c243aa4e64ae8c553c6d0b633d9be59229fb38c6ca40ab8",
  "_filesize": 121017,
  "_sha256": "5b166d7368c46ee75c243aa4e64ae8c553c6d0b633d9be59229fb38c6ca40ab8",
  "_created": "2026-05-26T10:10:15.000Z",
  "_published": "2026-05-26T10:12:21.077Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77852642822,
      "time": 96,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7214396607"
    },
    {
      "job": 77852642845,
      "time": 94,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7214395842"
    },
    {
      "job": 77852642798,
      "time": 73,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7214388011"
    },
    {
      "job": 77852643021,
      "time": 85,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7214392306"
    },
    {
      "job": 77852284748,
      "time": 134,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7214362753"
    },
    {
      "job": 77852642776,
      "time": 80,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7214391122"
    },
    {
      "job": 77852642852,
      "time": 55,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7214382412"
    },
    {
      "job": 77852642945,
      "time": 66,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7214386158"
    },
    {
      "job": 77852642940,
      "time": 56,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7214382740"
    }
  ],
  "_buildurl": "https://github.com/r-universe/eahouseman/actions/runs/26445951112",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/OxyBS",
  "_commit": {
    "id": "45e8a684ce45b971510a81d97572b8703f2d04a0",
    "author": "E. Andres Houseman <eahouseman@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.5\n",
    "time": 1487631496
  },
  "_maintainer": {
    "name": "E. Andres Houseman",
    "email": "eahouseman@gmail.com",
    "login": "eahouseman",
    "description": "I hold a doctorate in Biostatistics and have held faculty positions in Public Health.  I am currently working on some community projects to learn ML/AI.",
    "uuid": 46732893
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.2.2",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "eahouseman",
      "count": 1,
      "uuid": 46732893
    }
  ],
  "_userbio": {
    "uuid": 46732893,
    "type": "user",
    "name": "Eugene Andres Houseman",
    "description": "I hold a doctorate in Biostatistics and have held faculty positions in Public Health.  I am currently working on some community projects to learn ML/AI."
  },
  "_downloads": {
    "count": 577,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/OxyBS"
  },
  "_mentions": 1,
  "_searchresults": 12,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/OxyBS.html",
    "manual.pdf"
  ],
  "_realowner": "eahouseman",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2015-12-01"
    },
    {
      "version": "1.5",
      "date": "2017-02-20"
    }
  ],
  "_exports": [
    "diffBeta1",
    "diffBeta2",
    "fitOneOxBS",
    "fitOxBS",
    "likeOxBS",
    "scoreOxBS"
  ],
  "_datasets": [
    {
      "name": "exampleMethBS",
      "title": "Sample Data: Methylation (red) signals from conventional bisulfite conversion.",
      "object": "OxyBSSampleData",
      "file": "OxyBSSampleData.RData",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "3999941120_R03C01",
        "3999941120_R03C02",
        "3999941120_R05C02",
        "3999941120_R01C01",
        "3999941120_R01C02",
        "3999941120_R06C02",
        "3999941129_R02C02",
        "3999941129_R06C01",
        "3999941129_R02C01",
        "3999941129_R05C02",
        "3999941129_R05C01",
        "3999941129_R03C02",
        "3999840044_R01C02",
        "3999840044_R04C02",
        "3999840044_R04C01",
        "3999840044_R03C01",
        "3999840044_R06C02",
        "3999840044_R05C01",
        "3999840069_R01C02",
        "3999840069_R01C01",
        "3999840069_R06C01",
        "3999840069_R05C02",
        "3999840069_R02C01",
        "3999840069_R03C01",
        "3999876055_R02C01",
        "3999876055_R03C02",
        "3999876055_R06C02",
        "3999876055_R01C01",
        "3999876055_R06C01",
        "3999876055_R05C02"
      ],
      "rows": 30,
      "table": true,
      "tojson": true
    },
    {
      "name": "exampleMethOxBS",
      "title": "Sample Data: Methylation (red) signals from oxy-bisulfite conversion.",
      "object": "OxyBSSampleData",
      "file": "OxyBSSampleData.RData",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "3999941120_R05C01",
        "3999941120_R02C02",
        "3999941120_R04C01",
        "3999941120_R04C02",
        "3999941120_R02C01",
        "3999941120_R06C01",
        "3999941129_R04C01",
        "3999941129_R06C02",
        "3999941129_R04C02",
        "3999941129_R03C01",
        "3999941129_R01C01",
        "3999941129_R01C02",
        "3999840044_R02C02",
        "3999840044_R02C01",
        "3999840044_R03C02",
        "3999840044_R05C02",
        "3999840044_R06C01",
        "3999840044_R01C01",
        "3999840069_R05C01",
        "3999840069_R03C02",
        "3999840069_R04C02",
        "3999840069_R04C01",
        "3999840069_R06C02",
        "3999840069_R02C02",
        "3999876055_R02C02",
        "3999876055_R05C01",
        "3999876055_R01C02",
        "3999876055_R04C02",
        "3999876055_R04C01",
        "3999876055_R03C01"
      ],
      "rows": 30,
      "table": true,
      "tojson": true
    },
    {
      "name": "exampleUnmethBS",
      "title": "Sample Data: Unmethylated (green) signals from conventional bisulfite conversion.",
      "object": "OxyBSSampleData",
      "file": "OxyBSSampleData.RData",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "3999941120_R03C01",
        "3999941120_R03C02",
        "3999941120_R05C02",
        "3999941120_R01C01",
        "3999941120_R01C02",
        "3999941120_R06C02",
        "3999941129_R02C02",
        "3999941129_R06C01",
        "3999941129_R02C01",
        "3999941129_R05C02",
        "3999941129_R05C01",
        "3999941129_R03C02",
        "3999840044_R01C02",
        "3999840044_R04C02",
        "3999840044_R04C01",
        "3999840044_R03C01",
        "3999840044_R06C02",
        "3999840044_R05C01",
        "3999840069_R01C02",
        "3999840069_R01C01",
        "3999840069_R06C01",
        "3999840069_R05C02",
        "3999840069_R02C01",
        "3999840069_R03C01",
        "3999876055_R02C01",
        "3999876055_R03C02",
        "3999876055_R06C02",
        "3999876055_R01C01",
        "3999876055_R06C01",
        "3999876055_R05C02"
      ],
      "rows": 30,
      "table": true,
      "tojson": true
    },
    {
      "name": "exampleUnmethOxBS",
      "title": "Sample Data: Unmethylated (green) signals from oxy-bisulfite conversion.",
      "object": "OxyBSSampleData",
      "file": "OxyBSSampleData.RData",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "3999941120_R05C01",
        "3999941120_R02C02",
        "3999941120_R04C01",
        "3999941120_R04C02",
        "3999941120_R02C01",
        "3999941120_R06C01",
        "3999941129_R04C01",
        "3999941129_R06C02",
        "3999941129_R04C02",
        "3999941129_R03C01",
        "3999941129_R01C01",
        "3999941129_R01C02",
        "3999840044_R02C02",
        "3999840044_R02C01",
        "3999840044_R03C02",
        "3999840044_R05C02",
        "3999840044_R06C01",
        "3999840044_R01C01",
        "3999840069_R05C01",
        "3999840069_R03C02",
        "3999840069_R04C02",
        "3999840069_R04C01",
        "3999840069_R06C02",
        "3999840069_R02C02",
        "3999876055_R02C02",
        "3999876055_R05C01",
        "3999876055_R01C02",
        "3999876055_R04C02",
        "3999876055_R04C01",
        "3999876055_R03C01"
      ],
      "rows": 30,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "diffBeta1",
      "title": "First derivative of beta minus-log-pdf with respect to first parameter",
      "topics": [
        "diffBeta1"
      ]
    },
    {
      "page": "diffBeta2",
      "title": "First derivative of beta minus-log-pdf with respect to second parameter",
      "topics": [
        "diffBeta2"
      ]
    },
    {
      "page": "exampleMethBS",
      "title": "Sample Data: Methylation (red) signals from conventional bisulfite conversion.",
      "topics": [
        "exampleMethBS"
      ]
    },
    {
      "page": "exampleMethOxBS",
      "title": "Sample Data: Methylation (red) signals from oxy-bisulfite conversion.",
      "topics": [
        "exampleMethOxBS"
      ]
    },
    {
      "page": "exampleUnmethBS",
      "title": "Sample Data: Unmethylated (green) signals from conventional bisulfite conversion.",
      "topics": [
        "exampleUnmethBS"
      ]
    },
    {
      "page": "exampleUnmethOxBS",
      "title": "Sample Data: Unmethylated (green) signals from oxy-bisulfite conversion.",
      "topics": [
        "exampleUnmethOxBS"
      ]
    },
    {
      "page": "fitOneOxBS",
      "title": "Fit one OxyBS result",
      "topics": [
        "fitOneOxBS"
      ]
    },
    {
      "page": "fitOxBS",
      "title": "Fit OxyBS for one specimen",
      "topics": [
        "fitOxBS"
      ]
    },
    {
      "page": "likeOxBS",
      "title": "Likelihood function for C/5mC/5hmC likelihood estimator",
      "topics": [
        "likeOxBS"
      ]
    },
    {
      "page": "scoreOxBS",
      "title": "Score function for C/5mC/5hmC likelihood estimator",
      "topics": [
        "scoreOxBS"
      ]
    }
  ],
  "_rundeps": [],
  "_score": 1.0791812460476249,
  "_indexed": true,
  "_nocasepkg": "oxybs",
  "_universes": [
    "eahouseman"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.5",
      "date": "2026-05-26T10:11:59.000Z",
      "distro": "noble",
      "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0",
      "fileid": "55089ace100ece5b68d3fdbf4f44eeb0ff4f53c35023871a6778a8419ca6081c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/26445951112"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.5",
      "date": "2026-05-26T10:11:57.000Z",
      "distro": "noble",
      "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0",
      "fileid": "ddddb6cef85150186866336cf6682813f9c8d00c2430100cd40d9ecc9a4b0be7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/26445951112"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.5",
      "date": "2026-05-26T10:11:37.000Z",
      "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0",
      "fileid": "ba96d1119e92df7511284178381f3e2e625842b81194b9598c7caf5df687c345",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/26445951112"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.5",
      "date": "2026-05-26T10:11:47.000Z",
      "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0",
      "fileid": "c93c247192917f58bd743983e8951bc57cc05caffb739252fea8899fb8477e2e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/26445951112"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.5",
      "date": "2026-05-26T10:11:52.000Z",
      "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0",
      "fileid": "cdf0f2d2ef07e65ee9892ff763143a5f09a17dc1e681452166fd588dbed3e38d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/26445951112"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.5",
      "date": "2026-05-26T10:11:15.000Z",
      "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0",
      "fileid": "9212081a24a47c196469e13e0e647855cf31913156171dfa7adab7102d1450eb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/26445951112"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.5",
      "date": "2026-05-26T10:11:26.000Z",
      "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0",
      "fileid": "7c1086b231594e4fab8c891304dcf426d69bc780efe38a315ea21b1d1e3ca430",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/26445951112"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.5",
      "date": "2026-05-26T10:11:16.000Z",
      "commit": "45e8a684ce45b971510a81d97572b8703f2d04a0",
      "fileid": "ce82deb7e41140623d7f7618a288b3fe13abce7907850e8794367f3448acc729",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eahouseman/actions/runs/26445951112"
    }
  ]
}